asivache a6bd509593 Changing the carpet under your feet!! New incremental update to th eROD system has arrived. ... all the updated classes now make use of new SeekableRodIterator instead of RODIterator. RODIterator class deleted. This batch makes only trivial updates to tests dictated by the change in the ROD system interface. Few less trivial updates to follow. This is a partial commit; a few walkers also still need to be updated, hold on... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1667 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-21 16:55:22 +00:00
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gatk	Changing the carpet under your feet!! New incremental update to th eROD system has arrived.	2009-09-21 16:55:22 +00:00
playground/gatk/walkers/varianteval	fix for the eval tests, and a change to the backedbygenotypes interface, more changes to come	2009-09-18 22:25:16 +00:00
utils	Adding the VCF ROD. Also changed the VCF objects to much more user friendly.	2009-09-18 20:19:34 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	initial VariantEvalWalker test. More to be added soon...	2009-09-09 01:02:04 +00:00