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annotator
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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beagle
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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bqsr
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Added check that BaseRecalibrator is not being run on a reduced bam.
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2013-02-06 10:14:27 -05:00 |
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compression/reducereads
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Fixing the failing RR integration tests.
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2013-02-06 12:40:56 -05:00 |
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diagnostics
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walker to calculate per base coverage distribution
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2013-02-07 16:33:05 -05:00 |
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diffengine
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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fasta
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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genotyper
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Updated md5's from BiasedDownsamplerIntegrationTest that changed due to changes in HaplotypeCaller - changing HashMaps to LinkedHashMaps changed ordering of reads presented to BiasedDownSampler which changed reads chosen, thereby marginally changing PL's and some site info.
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2013-02-14 20:18:49 -05:00 |
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haplotypecaller
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Fixed non-determinism in HaplotypeCaller and some UG calls -
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2013-02-12 15:43:29 -05:00 |
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indels
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Update MD5s to reflect version number change in the BAM header
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2013-02-01 13:51:31 -05:00 |
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phasing
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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validation
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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varianteval
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Move some VCF/VariantContext methods back to the GATK based on feedback
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2013-01-29 16:56:55 -05:00 |
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variantrecalibration
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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variantutils
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Replace org.broadinstitute.variant with jar built from the Picard repo
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2013-02-05 17:24:25 -05:00 |
b18f216033