Guillermo del Angel b18f216033 Updated md5's from BiasedDownsamplerIntegrationTest that changed due to changes in HaplotypeCaller - changing HashMaps to LinkedHashMaps changed ordering of reads presented to BiasedDownSampler which changed reads chosen, thereby marginally changing PL's and some site info.		2013-02-14 20:18:49 -05:00
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src/org/broadinstitute/sting	Fixed non-determinism in HaplotypeCaller and some UG calls -	2013-02-12 15:43:29 -05:00
test/org/broadinstitute/sting	Updated md5's from BiasedDownsamplerIntegrationTest that changed due to changes in HaplotypeCaller - changing HashMaps to LinkedHashMaps changed ordering of reads presented to BiasedDownSampler which changed reads chosen, thereby marginally changing PL's and some site info.	2013-02-14 20:18:49 -05:00