hanna b18caa2052 Fix for GSA-90: System isn't failing with an error when you use the wrong reference. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1225 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-13 20:42:12 +00:00
..
gatk	Fix for GSA-90: System isn't failing with an error when you use the wrong reference.	2009-07-13 20:42:12 +00:00
playground	ignore unmapped reads in all the indel walkers (since they're giving me overhead issues)	2009-07-13 16:51:11 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Fix for GSA-90: System isn't failing with an error when you use the wrong reference.	2009-07-13 20:42:12 +00:00