Mark DePristo b16de45ce4 Command-line read filters are now applied before Walker default filters ... -- This allows us to use -rf ReassignMappingQuality to reassign mapping qualities to 60 *before* the BQSR filters them out with MappingQualityUnassignedFilter. -- delivers #50222251		2013-05-30 16:54:18 -04:00
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net/sf/samtools	Delete unused FastaSequenceIndexBuilder class and accompanying test	2013-05-01 01:02:01 -04:00
org/broadinstitute/sting	Command-line read filters are now applied before Walker default filters	2013-05-30 16:54:18 -04:00