Mark DePristo b16de45ce4 Command-line read filters are now applied before Walker default filters ... -- This allows us to use -rf ReassignMappingQuality to reassign mapping qualities to 60 *before* the BQSR filters them out with MappingQualityUnassignedFilter. -- delivers #50222251		2013-05-30 16:54:18 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Command-line read filters are now applied before Walker default filters	2013-05-30 16:54:18 -04:00
test	Command-line read filters are now applied before Walker default filters	2013-05-30 16:54:18 -04:00