gatk3的最后一个经典版本3.8

Eric Banks b1677fc719 Fixed JIRA GSA-520 for Guillermo: when intervals with zero coverage were present, DiagnoseTargets was trying to merge them with the next interval (even if non-overlapping) which would cause problems later on when it checked to make sure that intervals were strictly overlapping.		2012-09-07 14:25:57 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Downsampling: experimental engine integration	2012-09-06 15:03:27 -04:00
public	Fixed JIRA GSA-520 for Guillermo: when intervals with zero coverage were present, DiagnoseTargets was trying to merge them with the next interval (even if non-overlapping) which would cause problems later on when it checked to make sure that intervals were strictly overlapping.	2012-09-07 14:25:57 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	More memory for gatkdocs and extracthelp targets	2012-09-05 15:45:22 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00