gatk3的最后一个经典版本3.8

Jacob Silterra b15edd9eb3 Modifications so these classes can more easily be used as a library. In particular: ... 0. Add additional create method to MongoVariantContext as convenience, if we want a custom TruthStatus (and change "type" to less ambiguous "truthStatus") 1. Have NA12878KnowledgeBase return WriteResults from insert methods, so caller can know if there's an error 2. Provide constructors for NA12878DBArgumentCollection, since we need to be able to create this class for NA12878DBKnowledgeBase		2012-11-27 14:49:56 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Merging latest CMI updates with UNSTABLE	2012-11-27 09:08:00 -05:00
public	Merged bug fix from Stable into Unstable	2012-11-27 14:41:07 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Merging CMI-0.5.0 and GATK-2.2 together.	2012-11-14 10:42:03 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00