gatk3的最后一个经典版本3.8

Mark DePristo b127fc6a1a Expand NGSPlatform to meet SAM 1.4 spec, with full unit tests ... -- Added CAPILLARY and HELICOS platforms as required by spec 1.4 -- Added extensive unit tests to ensure NGSPlatform functions work as expected. -- Fixed some NPE bugs for reads that don't have RGs or PLs in their RG fields		2013-02-09 11:16:21 -05:00
licensing	Added distance across contigs calculation to GenomeLocs	2013-02-07 16:31:41 -05:00
protected/java	walker to calculate per base coverage distribution	2013-02-07 16:33:05 -05:00
public	Expand NGSPlatform to meet SAM 1.4 spec, with full unit tests	2013-02-09 11:16:21 -05:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00