hanna b125571a98 Intermediate check in: transfer responsibility of wrapping the GenotypeWriter around the output stream to the output ... management code. Currently, will not work when neither -varout nor -vf are specified, but should work in all other cases. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2463 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-29 16:11:11 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Intermediate check in: transfer responsibility of wrapping the GenotypeWriter around the output stream to the output	2009-12-29 16:11:11 +00:00
test/org/broadinstitute/sting	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00