Ryan Poplin b0e6afec48 Bug fix for HMM optimization. Need to also check the gap continuation penalty array for the index with the first discrepancy.		2011-11-08 14:51:25 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fix for HMM optimization. Need to also check the gap continuation penalty array for the index with the first discrepancy.	2011-11-08 14:51:25 -05:00
test	Bug fix in SelectVariants when using a discordance track but no sample specifications. Added integration test to test this.	2011-11-07 15:25:16 -05:00