gatk3的最后一个经典版本3.8

Ryan Poplin b0e6afec48 Bug fix for HMM optimization. Need to also check the gap continuation penalty array for the index with the first discrepancy.		2011-11-08 14:51:25 -05:00
public	Bug fix for HMM optimization. Need to also check the gap continuation penalty array for the index with the first discrepancy.	2011-11-08 14:51:25 -05:00
settings	Adding the new jar	2011-11-07 15:08:19 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00