Eric Banks 17d627b86d Update the DPP and PBPP to use the BQSRv2 walkers		2012-07-17 13:15:32 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Update the DPP and PBPP to use the BQSRv2 walkers	2012-07-17 13:15:32 -04:00
src/org/broadinstitute/sting/queue	Pass the original GATK unsafe parameter to the VcfGatherFunction	2012-07-02 16:03:11 -04:00
test/org/broadinstitute/sting/queue	Refactored parsing of Rod/IntervalBinding. Queue S/G now uses all interval arguments passed to CommandLineGATK QFunctions including support for BED/tribble types, XL, ISR, and padding.	2012-06-27 01:15:22 -04:00