Khalid Shakir b090751f62 Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths. ... Updates to HybridSelectionPipeline: - Added annotations back via snpEff - Minor updates to VQSR paths and lowered memory		2011-09-27 14:33:57 -04:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Fixing Contracts for Java, and enabling contracts by default for unit/integration tests.	2011-07-08 15:34:39 -04:00
edu.mit.broad	Rev'ved picard to read new analysis_files.txt with a blank line after header and no reference sequence.	2011-08-29 19:33:04 -04:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Rev'ved picard to read new analysis_files.txt with a blank line after header and no reference sequence.	2011-08-29 19:33:04 -04:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
org.broad	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00