gatk3的最后一个经典版本3.8

David Roazen b06e71cedf Use build jars in test classpaths by default ... -Allows packaged resource files to be accessed within tests -Guards against packaging errors in dist/ jars by testing the jars that actually get run rather than unpackaged class files. Previously we were only protected against packaging errors in the monolithic jars posted to our website, not the dist/ jars used in everyday runs. -"ant fasttest" still uses the unpackaged class files for speed (don't want to have to rebuild the jars in fasttest). Relies on dubious methods to get at the resource files that would end up in the jars. -Eliminated the stupid separate "test" ivy config. Now we only invoke ivy ONCE during an ant build that includes tests.		2012-11-28 22:57:04 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Add ActiveRegionReadState handling	2012-11-28 13:59:57 -05:00
public	Update GATK packaging settings to package arbitrary resources	2012-11-28 15:26:05 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00