gatk3的最后一个经典版本3.8

Mark DePristo b063bcd38d Removing update0 support in VariantEval ... -- Now the only use for update0, calculating the number of processed loci, is centrally tracked in the walker itself not the evaluations. -- This allows us to avoid calling update0 are every genomic base in 100ks of evaluates when there are a lot of stratifications. -- No need to modify the integration tests, this optimization doesn't change the result of the calculation		2012-03-23 21:02:21 -04:00
public	Removing update0 support in VariantEval	2012-03-23 21:02:21 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00