..
VectorPairHMM
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
c
After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
2014-05-19 17:36:41 -04:00
chainFiles
The contig is named MT not M in b36. Delivers PT68890442.
2014-04-08 10:03:47 -04:00
doc
Updated readme in public/doc to just point to the website
2015-03-12 11:52:48 -04:00
external-example
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
gatk-engine
Allow overriding ValidateVariants' hard-coded cutoff for allele length
2015-09-17 10:49:14 -04:00
gatk-queue
ParallelShell added as a new JobRunner
2015-09-29 09:36:37 -03:00
gatk-queue-extensions-generator
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
gatk-queue-extensions-public
Adding PER_TARGET_COVERAGE option
2015-09-18 09:34:51 -04:00
gatk-root
Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.
2015-09-14 12:20:36 -04:00
gatk-tools-public
Trivial doc typo fix
2015-09-25 18:15:29 -04:00
gatk-utils
Changed calls for RGQ=0 from 0/0 to ./. in output of GenotypeGVCFs.
2015-09-23 15:35:09 -04:00
gsalib
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
java /config
Refactored maven directories and java packages replacing "sting" with "gatk".
2014-05-19 17:36:39 -04:00
package-tests
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
perl
Fixing the liftover script to not require strict VCF header validation.
2013-11-07 09:02:17 -05:00
repo
Updated gatk so it compiles on java 8
2015-06-26 15:59:46 -04:00
src /main
Added faster built executable, non-packaged jars.
2014-11-05 00:30:46 +08:00
pom.xml
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
b045f2d4aa