Mark DePristo 24864fd5b0 GATK now writes BCF output to any file with .bcf extension ... -- Moved VCF and BCF writers to variantcontext.writers -- Updated vcf.jar build path -- Refactored VCFWriter and other code. Now the best (and soon to be only) way to create these files is through a factory method called VariantContextWriterFactory. Renamed the general VCFWriter interface to VariantContextWriter which is implemented by VCFWriter and BCF2Writer.		2012-05-24 10:57:00 -04:00
..
net/sf	Fix serious engine bug that could cause reads to be dropped under certain circumstances	2012-02-13 16:25:21 -05:00
org/broadinstitute/sting	GATK now writes BCF output to any file with .bcf extension	2012-05-24 10:57:00 -04:00