Mark DePristo afd2f1a3f9 Individual VariantContextWriters are now package protected ... -- Added VCFHeader() constructor that makes an empty header, and updated VariantRecalibrator to use it -- Update build.xml to build vcf.jar with updated paths and bcf2 support.		2012-05-24 10:57:00 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Individual VariantContextWriters are now package protected	2012-05-24 10:57:00 -04:00
test	GATK now writes BCF output to any file with .bcf extension	2012-05-24 10:57:00 -04:00