gatk3的最后一个经典版本3.8

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David Roazen af6a897479 Extend on-the-fly sample renaming feature to vcfs -Only works with single-sample vcfs -As with bams, the user must provide a file mapping the absolute path to each vcf whose samples are to be renamed to the new sample name for that vcf. The argument is the same as for bams: --sample_rename_mapping_file, and the mapping file may contain a mix of bam and vcf files should the user wish. -It's an error to attempt to remap the sample names of a multi-sample or sites-only vcf -Implemented at the codec level at the instant the vcf header is first read in to minimize the chances of downstream code examining vcf headers/records before renaming occurs. -Integration tests are in sting, unit tests are in picard -Rev picard et. al. to 1.111.1902		2014-04-08 11:07:00 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Adding GenotypeSummaries as INFO field annotations.	2014-04-06 11:50:10 -04:00
public	Extend on-the-fly sample renaming feature to vcfs	2014-04-08 11:07:00 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/