ebanks ae9cba1c73 After an epic battle with this code until 3am last night, I have discovered that it is tragically and fatally busted. Ben clearly didn't understand how the ROD system works when writing it and so it is unusable in its current state. I've ripped out all code and it now gracefully exits telling the user that we are actively working on a replacement for this tool. Sigh. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4230 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-08 16:39:41 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	After an epic battle with this code until 3am last night, I have discovered that it is tragically and fatally busted. Ben clearly didn't understand how the ROD system works when writing it and so it is unusable in its current state. I've ripped out all code and it now gracefully exits telling the user that we are actively working on a replacement for this tool. Sigh.	2010-09-08 16:39:41 +00:00
test	Addition for Tim: recalculate the NM and UQ tags after realignment. Also, don't fix the insert size calculation, since that's done by fix mate information.	2010-09-08 04:02:14 +00:00