gatk3的最后一个经典版本3.8

Mark DePristo ae4d4482ac Parallel combine variants! ... -- CombineVariants is now TreeReducible! -- Integration tests running in parallel all pass except one (will fix) due to incorrect use of db=0 flag on input from old VCF format		2012-08-15 21:13:15 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Expanded the BQSR reporting script	2012-08-12 13:45:14 -04:00
public	Parallel combine variants!	2012-08-15 21:13:15 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Fix an issue with the classpath for external builds in build.xml	2012-08-15 16:08:21 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00