gatk3的最后一个经典版本3.8

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ldgauthier ae174d3359 Merge pull request #1541 from broadinstitute/ldg_revertToMedianRankSum Changed calculation of allele-specific rank sum so it's now the median of the per-sam…		2017-05-10 14:43:08 -04:00
.github	Add "GATK4 Implications" section to GATK3 pull request template	2016-05-06 13:39:47 -04:00
licensing	Update licenses	2016-03-05 01:09:43 -08:00
protected	Changed calculation of rank sum so it's now the median of the per-sample rank sums (because the rank sum across all sample data did worse for biallelics). Now only called alt for 0/1s has rank sum, similar to old paradigm. Combined gVCF rank sums stored in Histogram, then median is taken once during genotyping. Histogram uses Integer keys to eliminate numerical precision mess	2017-05-10 09:04:42 -04:00
public	Changed calculation of rank sum so it's now the median of the per-sample rank sums (because the rank sum across all sample data did worse for biallelics). Now only called alt for 0/1s has rank sum, similar to old paradigm. Combined gVCF rank sums stored in Histogram, then median is taken once during genotyping. Histogram uses Integer keys to eliminate numerical precision mess	2017-05-10 09:04:42 -04:00
settings/helpTemplates	Documentation fixes	2016-12-05 14:09:44 -05:00
.gitignore	Added issue and pull request templates	2016-04-04 13:27:45 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/