ebanks 04fe50cadd *** We no longer have a separate model for the single-sample case. *** ... For now, a single sample input will be special-cased in the EM model - but that will change when the EM model degenerates to the single sample output with a single sample as input. For now, the EM code for multi-samples isn't finished; I'm planning on checking that in soon. The SingleSampleIntegrationTest now uses the UnifiedCaller instead of SSG, and so should all of you. More on that in a separate email. Other minor cleanups added too. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1785 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-08 14:08:57 +00:00
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gatk	*** We no longer have a separate model for the single-sample case. ***	2009-10-08 14:08:57 +00:00
playground/gatk/walkers	changes to add VCF to the rod system, fix VCF output in VariantsToVCF, and some other minor changes	2009-09-24 15:16:11 +00:00
utils	Switched IndexedFastaSequenceFile over to use memory mapping to load data rather than	2009-10-08 00:07:15 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	delete the integration test temp files when the test is over	2009-09-25 16:34:08 +00:00