chartl ae05f5c7ad Fixin the header. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1787 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-08 15:49:28 +00:00
..
alignment	Fixed bug where not all alignments were returned if read aligned to multiple locations. Enhanced test suite to validate all alignments.	2009-10-04 18:20:20 +00:00
gatk	*** We no longer have a separate model for the single-sample case. ***	2009-10-08 14:08:57 +00:00
playground	Fixin the header.	2009-10-08 15:49:28 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	Switched IndexedFastaSequenceFile over to use memory mapping to load data rather than	2009-10-08 00:07:15 +00:00