gatk-3.8/public/java/src/org/broadinstitute/sting/gatk/traversals
Mark DePristo 7c5cdb51c2 UnitTests for ActivityProfile and minor ART cleanup
-- TODO for ryan -- there are bugs in ActivityProfile code that I cannot fix right now :-(
-- UnitTesting framework for ActivityProfile -- needs to be expanded
-- Minor helper functions for ActiveRegion to help with unit tests
2012-03-14 17:26:37 -04:00
..
TraversalEngine.java Start printing traversal stats after 30 seconds. I can't stand waiting 2 minutes. 2011-12-22 15:40:59 -05:00
TraverseActiveRegions.java UnitTests for ActivityProfile and minor ART cleanup 2012-03-14 17:26:37 -04:00
TraverseDuplicates.java GATKSAMRecord refactor 2011-11-03 15:43:26 -04:00
TraverseLoci.java Documentation request by Eric. At each stage of the GATK where filtering occurs, added documentation suggesting the goal of the filtering along with examples of suggested inputs and outputs. 2012-02-09 11:24:52 -05:00
TraverseReadPairs.java Walker.isDone() aborts execution early 2011-08-23 16:53:06 -04:00
TraverseReads.java GATKSAMRecord refactor 2011-11-03 15:43:26 -04:00
package-info.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00