Ryan Poplin 894d3340be Active Region Traversal should use GATKSAMRecords everywhere instead of SAMRecords. misc cleanup.		2012-02-03 17:13:52 -05:00
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AnalysisDataManager.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
AnalyzeCovariates.java	Active Region Traversal should use GATKSAMRecords everywhere instead of SAMRecords. misc cleanup.	2012-02-03 17:13:52 -05:00
package-info.java	Added GATKDocs for the BQSR walkers.	2011-08-18 10:57:48 -04:00