Michael McCowan c3a933ce84 Adaptations to accomodate Tribble API changes, comprising mostly of the following. ... * Refactoring implementations of readHeader(LineReader) -> readActualHeader(LineIterator), including nullary implementations where applicable. * Galvanizing fo generic types. * Test fixups, mostly to pass around LineIterators instead of LineReaders. * New rev of tribble, which incorporates a fix that addresses a problem with TribbleIndexedFeatureReader reading a header twice in some instances. * New rev of sam, to make AbstractIterator visible (was moved from picard -> sam in Tribble API refactor).		2013-08-19 15:52:47 -04:00
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GATKVCFUtilsUnitTest.java	Better GATK version and command line output	2013-06-20 11:19:13 -04:00
GATKVariantContextUtilsUnitTest.java	Add genotyping accuracy assessment to AssessNA12878	2013-06-13 15:05:32 -04:00
VCFIntegrationTest.java	org.broadinstitute.variant refactor, part 2	2013-01-28 09:03:46 -05:00
VariantContextBenchmark.java	Adaptations to accomodate Tribble API changes, comprising mostly of the following.	2013-08-19 15:52:47 -04:00