depristo a8f4ccf2f9 Retiring multi-sample genotyper ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3402 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-20 14:11:11 +00:00
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R	Initial checkin of AnalyzeCovariates.java which replaces analyzeRecalQuals_1KG.py and is updated to use the new Covariates system. It creates similar plots of residual error for each covariate that was used in the calculation. There is also an option to filter out base qualities below a given threshold.	2009-12-02 16:47:35 +00:00
java/src/org/broadinstitute/sting	Retiring multi-sample genotyper	2010-05-20 14:11:11 +00:00
python	Initial checkin of AnalyzeCovariates.java which replaces analyzeRecalQuals_1KG.py and is updated to use the new Covariates system. It creates similar plots of residual error for each covariate that was used in the calculation. There is also an option to filter out base qualities below a given threshold.	2009-12-02 16:47:35 +00:00