kshakir ac3f1be7f0 Added a samtools merge CLF. ... Using samtools to merge the low pass bams before cleaning to avoid "Too many open files." with 1500+ bams. Other minor cleanup as pointed out by the IntelliJ scala plugin. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5942 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-03 22:20:38 +00:00
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org/broadinstitute/sting	Added a samtools merge CLF.	2011-06-03 22:20:38 +00:00