chartl ad777a9c14 @BasicPileup - made the counts public so they can be used ... @PoolUtils - split reads by indel/simple base @BaseTransitionTable - complete refactoring, nicer now @UnifiedArgumentCollection - added PoolSize as an argument @UnifiedGenotyper - checks to ensure pooled sequencing uses the appropriate model @GenotypeCalculationModel - instantiates with the new PoolSize argument git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1867 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-16 21:56:56 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	@BasicPileup - made the counts public so they can be used	2009-10-16 21:56:56 +00:00
test/org/broadinstitute/sting	Updated integration tests for VariantEval. Hooray for IT!	2009-10-16 20:00:29 +00:00