39 lines
1.0 KiB
Java
Executable File
39 lines
1.0 KiB
Java
Executable File
package org.broadinstitute.sting.gatk.traversals;
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/**
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* Created by IntelliJ IDEA.
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* User: hanna
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* Date: Apr 8, 2009
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* Time: 4:13:40 PM
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*
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* Holds a bunch of basic information about the traversal.
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* TODO: Make this a class that can be passed around from the TraversalEngine to other entries that want to update it.
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*/
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public class TraversalStatistics {
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// Number of records (loci, reads) we've processed
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public static long nRecords;
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// How many reads have we processed, along with those skipped for various reasons
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public static int nReads;
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public static int nSkippedReads;
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public static int nUnmappedReads;
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public static int nNotPrimary;
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public static int nBadAlignments;
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public static int nSkippedIndels;
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public static int nDuplicates;
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static {
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reset();
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}
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public static void reset() {
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nRecords = 0;
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nReads = 0;
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nSkippedReads = 0;
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nUnmappedReads = 0;
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nNotPrimary = 0;
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nBadAlignments = 0;
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nSkippedIndels = 0;
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nDuplicates = 0;
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}
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}
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