hanna b7defeae83 Fix bug in unit tests created by new filter in TraversalEngine. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@868 348d0f76-0448-11de-a6fe-93d51630548a		2009-06-01 15:50:44 +00:00
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TraversalEngine.java	Fix bug in unit tests created by new filter in TraversalEngine.	2009-06-01 15:50:44 +00:00
TraversalStatistics.java	Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed	2009-04-17 01:27:36 +00:00
TraverseByLocusWindows.java	Fixing the naming of the function I checked in earlier.	2009-05-14 19:27:10 +00:00
TraverseDuplicates.java	Update to latest version of picard. Change imports in all classes dependent on picard public from import edu.mit.broad.picard... to import net.sf.picard...	2009-05-28 20:13:01 +00:00
TraverseLoci.java	Cleanup in datasources.providers namespace. Make it easier for others writing traversal engines to use.	2009-05-22 19:12:00 +00:00
TraverseReads.java	Moving some of the data sharding around. A new shard catagory now exits, INTERVAL. This saved a lot of code that was mirroring the same approach in both the read and locus shard strategies.	2009-05-27 18:24:31 +00:00