Mauricio Carneiro ad4ea0b80b Merged bug fix from Stable into Unstable		2011-09-01 18:14:45 -04:00
..
R	queueJobReport is a public feature of Queue	2011-08-29 17:20:54 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Adding hidden printing option. Also, always run UG in mode GENOTYPE_GIVEN_ALLELES given that we don't actually test for the correct alleles (otherwise UG may choose a different allele and we may falsely validate the wrong one).	2011-09-01 11:40:35 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merged bug fix from Stable into Unstable	2011-09-01 18:14:45 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00