Eric Banks bb0e3a26fc Added integration test for VCF writing. Also, bug fix for writing the GT-free records.		2011-07-13 14:57:21 -04:00
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commandline	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
gatk	Added integration test for VCF writing. Also, bug fix for writing the GT-free records.	2011-07-13 14:57:21 -04:00
jna	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
utils	Don't output source and ref header lines anymore. Short-term motivation for this is that I'd like this tool when run on a VCF to emit the exact same VCF. Long-term motivation is that these tags should be output by the VCF writer itself for all tools.	2011-07-13 14:40:01 -04:00
BaseTest.java	DiffEngine utility function simpleDiffFiles	2011-07-11 23:10:27 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00