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gatk-3.8/java/src/org/broadinstitute/sting/gatk/datasources/providers
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hanna c1e53d407d The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 
unicode quote characters embedded in it.  These characters were invisible inside
IntelliJ but cause compile warnings for Ryan and Aaron, who for whatever reason
have a different default charset.  Fixed.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3203 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-04-20 15:26:32 +00:00
..
AllLocusView.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
CoveredLocusView.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
InvalidPositionException.java Changed dataSources to datasources, to be consistant with the rest of our package names. Also, this makes me champion in the largest check-in contest. 2009-06-11 18:13:22 +00:00
LocusReferenceView.java Fixing the bug introduced with the earlier commit. When trimming locus to the current bases, we need to take into account expanded boundaries (for windowed reference traversals) 2010-03-22 19:20:34 +00:00
LocusShardDataProvider.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
LocusView.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
ManagingReferenceOrderedView.java Performance improvements for RODs in conjunction with new sharding system. 2010-03-16 14:54:12 +00:00
RODMetaDataContainer.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ReadBasedReferenceOrderedView.java the last-mile commit for Tribble integration. The system is now ready for Tribble to be turned on, as soon as we've removed any dependencies in the ROD code on interfaces that aren't in the Tribble library (i.e. the Variation or Genotype interface on RODs). All of the walkers should be up to date. 2010-03-31 22:39:56 +00:00
ReadReferenceView.java Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes. 2009-07-06 15:41:30 +00:00
ReadShardDataProvider.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
ReadView.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
ReferenceOrderedView.java Missing file 2009-09-12 19:17:09 +00:00
ReferenceView.java Cleanup emergency fixes for out-of-bounds issues in reference retrieval. Fix spelling mistakes. 2009-07-06 15:41:30 +00:00
RodLocusView.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ShardDataProvider.java Rework the way the MicroScheduler handles locus shards to handle intervals that span shards 2010-03-11 18:40:31 +00:00
View.java Changed dataSources to datasources, to be consistant with the rest of our package names. Also, this makes me champion in the largest check-in contest. 2009-06-11 18:13:22 +00:00
package-info.java Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file 2009-12-04 20:08:41 +00:00