Valentin Ruano Rubio ac77a4c699 Merge pull request #316 from broadinstitute/md_filter_counting ... Bugfix for counting of applied filters		2013-07-08 10:58:47 -07:00
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R	Removed plots generation from the BaseRecalibration software	2013-06-19 14:47:56 -04:00
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doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Merge pull request #316 from broadinstitute/md_filter_counting	2013-07-08 10:58:47 -07:00
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packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Disable RetryMemoryLimit pipeline test	2013-07-03 13:38:28 -04:00
testdata	Somehow the index of exampleDBSNP.vcf was missing	2013-05-28 15:29:43 -04:00