Roger Zurawicki ac36271457 Fixed extra reads showing up in Variable Sites ... Reads that were not hard clipped for the variable site no longer show up in output file Walker now uses unclippedStart of Read to determine position in the sliding Window		2011-08-23 11:26:00 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Fixed extra reads showing up in Variable Sites	2011-08-23 11:26:00 -04:00