gatk-3.8/public/c++/VectorPairHMM/Sandbox.h

72 lines
1.7 KiB
C

/* DO NOT EDIT THIS FILE - it is machine generated */
#include <jni.h>
/* Header for class Sandbox */
#ifndef _Included_Sandbox
#define _Included_Sandbox
#ifdef __cplusplus
extern "C" {
#endif
#undef Sandbox_enableAll
#define Sandbox_enableAll -1LL
/*
* Class: Sandbox
* Method: jniGetMachineType
* Signature: ()J
*/
JNIEXPORT jlong JNICALL Java_Sandbox_jniGetMachineType
(JNIEnv *, jobject);
/*
* Class: Sandbox
* Method: jniInitializeClassFieldsAndMachineMask
* Signature: (Ljava/lang/Class;Ljava/lang/Class;J)V
*/
JNIEXPORT void JNICALL Java_Sandbox_jniInitializeClassFieldsAndMachineMask
(JNIEnv *, jobject, jclass, jclass, jlong);
/*
* Class: Sandbox
* Method: jniInitializeHaplotypes
* Signature: (I[LSandbox/JNIHaplotypeDataHolderClass;)V
*/
JNIEXPORT void JNICALL Java_Sandbox_jniInitializeHaplotypes
(JNIEnv *, jobject, jint, jobjectArray);
/*
* Class: Sandbox
* Method: jniFinalizeRegion
* Signature: ()V
*/
JNIEXPORT void JNICALL Java_Sandbox_jniFinalizeRegion
(JNIEnv *, jobject);
/*
* Class: Sandbox
* Method: jniComputeLikelihoods
* Signature: (II[LSandbox/JNIReadDataHolderClass;[LSandbox/JNIHaplotypeDataHolderClass;[DI)V
*/
JNIEXPORT void JNICALL Java_Sandbox_jniComputeLikelihoods
(JNIEnv *, jobject, jint, jint, jobjectArray, jobjectArray, jdoubleArray, jint);
/*
* Class: Sandbox
* Method: jniClose
* Signature: ()V
*/
JNIEXPORT void JNICALL Java_Sandbox_jniClose
(JNIEnv *, jobject);
/*
* Class: Sandbox
* Method: doEverythingNative
* Signature: ([B)V
*/
JNIEXPORT void JNICALL Java_Sandbox_doEverythingNative
(JNIEnv *, jobject, jstring);
#ifdef __cplusplus
}
#endif
#endif