gatk3的最后一个经典版本3.8

Eric Banks ac0c44720b I started to put together a set of unit tests for the PileupElement creation functionality of LocusIteratorByState and found pretty quickly that it's definitely still busted for indels. The data provider is nowhere near comprehensive yet, but I need to sit back and think about how to really test some of the functionality of LIBS. Committing what I have for now because at the very least it'll be helpful going forward (failing tests are commented out with TODO).		2012-08-30 22:49:13 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
public	I started to put together a set of unit tests for the PileupElement creation functionality of LocusIteratorByState and found pretty quickly that it's definitely still busted for indels. The data provider is nowhere near comprehensive yet, but I need to sit back and think about how to really test some of the functionality of LIBS. Committing what I have for now because at the very least it'll be helpful going forward (failing tests are commented out with TODO).	2012-08-30 22:49:13 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00