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gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers
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ebanks abf48cee05 Moving over to VariantContext from Variation 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3195 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-04-19 06:56:29 +00:00
..
annotator Heads up everyone: 2010-04-09 05:37:25 +00:00
concordance Fixing/cleaning up the vcf merge util 2010-03-19 15:13:32 +00:00
fasta Moving over to VariantContext from Variation 2010-04-19 06:56:29 +00:00
filters Moving VariantFiltration over to use VariantContext. 2010-03-19 18:35:23 +00:00
genotyper Adding performance tests for the indel realigner; should take ~3 hours. 2010-04-11 04:45:22 +00:00
indels adding a catch for the exception thrown by samtools when it attempts to close /dev/null in the performance tests. 2010-04-16 17:41:48 +00:00
recalibration adding a catch for the exception thrown by samtools when it attempts to close /dev/null in the performance tests. 2010-04-16 17:41:48 +00:00
sequenom Redoing the conversion to VariantContext: instead of walkers passing in a ref allele, they pass in the ref context and the adaptors create the allele. This is the right way of doing it. 2010-04-19 05:47:17 +00:00
varianteval Renaming for consistency 2010-04-15 20:36:19 +00:00
DepthOfCoverageIntegrationTest.java Execs() temporarily disabled after removal of bam file. New tests forthcoming. 2010-04-15 20:11:56 +00:00
PileupWalkerIntegrationTest.java Now that we changed how deletions are represented, got to update MD5... 2009-12-30 22:00:58 +00:00
PrintReadsWalkerUnitTest.java A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests. 2010-04-08 06:14:15 +00:00
VariantsToVCFIntegrationTest.java Redoing the conversion to VariantContext: instead of walkers passing in a ref allele, they pass in the ref context and the adaptors create the allele. This is the right way of doing it. 2010-04-19 05:47:17 +00:00