Mauricio Carneiro 9346c5b37a Merged bug fix from Stable into Unstable		2012-06-26 14:55:41 -04:00
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examples	AggregateMetrics:	2012-04-17 11:45:32 -04:00
lib	Mostly small changes to my own scala scripts: .vcf.gz compatibility for output files, smarter beagle generation, simple script to scatter-gather combine variants. Whole genome indel calling now uses the gold standard indel set.	2012-02-22 17:20:04 -05:00
DataProcessingPipeline.scala	Updating validation parameter in the DPP	2012-06-26 14:54:37 -04:00
GATKResourcesBundle.scala	Merge branch 'master' of ssh://gsa1.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-13 09:28:16 -04:00
MethodsDevelopmentCallingPipeline.scala	Turning off PHONE HOME option in the MDCP	2012-01-27 11:13:30 -05:00
PacbioProcessingPipeline.scala	Minor updates to pacbio data processing script to make it work with the latest bwa version/settings.	2012-05-22 10:24:45 -04:00