Mauricio Carneiro 389380a590 ReduceReads ref bases are now output as '=' to save space ... Restructured the sliding window framework to manipulate a wrapped version of the SAMRecord that contains information about the reference.		2011-10-30 12:04:39 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	ReduceReads ref bases are now output as '=' to save space	2011-10-30 12:04:39 -04:00
test	Allow processing of empty intervals, but warn user when this case is encountered.	2011-10-28 12:12:14 -04:00