gatk3的最后一个经典版本3.8

Mauricio Carneiro ab4f58a5e9 A base for a test walker for reduce reads ... this walker allows general testing on reduce reads given two bam files to make sure the reduce reads are not screwing up the format. This is just the base of the walker, the tests need to be implemented independently inside the framework.		2011-10-30 22:26:16 -04:00
public	ReduceReads ref bases are now output as '=' to save space	2011-10-30 12:04:39 -04:00
settings	Picard upgrade to 1.55.	2011-10-24 17:02:27 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00