gatk-3.8

History

Eric Banks ab2f541d1f Small optimizations to the joint calling code. Thanks to profiling I noticed that the determineCoefficient() method was being called too often. Because it returns a constant result in half of the invocations, its value should be cached when possible. Also, the various calls to getLog10Likelihoods() showed up in the profiler, so I pulled those out too. All told, it speeds up the genotyping by about 10 percent according to the profiler.	2016-01-12 21:48:20 -05:00
..
src	Small optimizations to the joint calling code.	2016-01-12 21:48:20 -05:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00

Eric Banks ab2f541d1f Small optimizations to the joint calling code.

Thanks to profiling I noticed that the determineCoefficient() method was being called too often.
Because it returns a constant result in half of the invocations, its value should be cached when possible.
Also, the various calls to getLog10Likelihoods() showed up in the profiler, so I pulled those out too.

All told, it speeds up the genotyping by about 10 percent according to the profiler.

2016-01-12 21:48:20 -05:00

src

Small optimizations to the joint calling code.

2016-01-12 21:48:20 -05:00

pom.xml

Update pom versions to mark the start of GATK 3.6 development

2015-11-25 01:52:51 -05:00