gatk3的最后一个经典版本3.8

Go to file

Eric Banks ab2f541d1f Small optimizations to the joint calling code. Thanks to profiling I noticed that the determineCoefficient() method was being called too often. Because it returns a constant result in half of the invocations, its value should be cached when possible. Also, the various calls to getLog10Likelihoods() showed up in the profiler, so I pulled those out too. All told, it speeds up the genotyping by about 10 percent according to the profiler.		2016-01-12 21:48:20 -05:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Small optimizations to the joint calling code.	2016-01-12 21:48:20 -05:00
public	Backport maxNoCall functionality from GATK4	2016-01-06 11:09:38 -05:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/