Eric Banks ab1c48745b Need to catch RuntimeExceptions coming out of Picard too so that they show up as UserErrors (some BAM errors are thrown as REs).		2012-03-21 12:13:52 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Need to catch RuntimeExceptions coming out of Picard too so that they show up as UserErrors (some BAM errors are thrown as REs).	2012-03-21 12:13:52 -04:00
test	Minor: cleaner way of turning off index-on-the-fly checking in case we want to turn it back on.	2012-03-18 00:53:29 -04:00