gatk3的最后一个经典版本3.8

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Kristian Cibulskis ab1053e83c It compiles, and produces results! fixed NPE when normal contains no reads first integration test (micro) and unit tests, also rename of MuTectHC -> M2 adding in standard GATK license terms incorporated HOSTILE mode to PCR Error Correction removed tumor and normal name parameters and cleaned up internal name handling changes to allow for calling without a matched normal (technically, not true 'tumor-only' calling). Used for panel-of-normals creation additional regression tests, based on DREAM data. Removed accidental addition of TandemRepeatAnnotator to default annotations updated MD5 based on run from GSA4 to fix bamboo issue reverted unneeded visibility changes		2015-03-13 18:28:01 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	It compiles, and produces results!	2015-03-13 18:28:01 -04:00
public	Merge pull request #814 from broadinstitute/biocyberman_maven_patches	2015-03-13 16:26:02 -04:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/