aaf11f00e3
-- Trivial import changes in some walkers -- SelectVariants has a new hidden mode to fully decode a VCF file -- DepthPerAlleleBySample (AD) changed to have not UNBOUNDED by A type, which is actually the right type -- GenotypeLikelihoods now implements List<Double> for convenience. The PL duality here is going to be removed in a subsequent commit -- BugFixes in BCF2Writer. Proper handling of padding. Bugfix for nFields for a field -- padAllele function in VariantContextUtils -- Much better tests for VariantContextTestProvider, including loading parts of dbSNP 135 and the Phase II 1000G call set with genotypes to test encoding / decoding of fields. |
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| licensing | ||
| protected/java/src/org/broadinstitute/sting | ||
| public | ||
| settings | ||
| .gitignore | ||
| build.xml | ||
| ivy.xml | ||