gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio aae04b6122 Fixes explicit limitation of the maximum ploidy of the reference-confidence model Story: ===== - https://www.pivotaltracker.com/story/show/83803796 Changes: ======= - From a fix maximum ploidy indel RCM likelihood cache to a dynamically resizable one. - Used the occassion to removed an unused and deprecated method from ReferenceConfidenceModel Testing: ======= - Added integration test to check on ploidies larger than the previous limit of 20.		2015-01-07 10:43:22 -05:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Fixes explicit limitation of the maximum ploidy of the reference-confidence model	2015-01-07 10:43:22 -05:00
public	Adding Axiom_Exome_Plus.sites_only.all_populations.poly.vcf to the resource bundle because it is used in the v3.3 best practices	2015-01-05 14:52:31 -05:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/